INSECTIVORA
Erinaceidae (Hedgehogs and Gymnures)
  Podogymnura aureospinula
  Podogymnura truei
Soricidae (Shrews)
  Crocidura attenuata
  Crocidura beatus
  Crocidura grandis
  Crocidura grayi
  Crocidura mindorus
  Crocidura negrina
  Crocidura palawanensis
  Suncus murinus

SCANDENTIA
Tupaiidae (Tree Shrews)
 Tupaia palawanesis
  Urogale everetti

DERMOPTERA
Cynocephalidae (Flying Lemurs)
 Cynocephalus volans

CHIROPTERA
Pteropodidae (Fruit Bats)
  Acerodon jubatus
  Acerodon leucotis
  Alionycteris paucidentata
  Cynopterus brachyotis
  Dobsonia chapmani
  Dyacopterus spadiceus
  Eonycteris robusta
  Eonycteris spelaea
  Haplonycteris fischeri
  Haplonycteris sp. A
  Harpyionycteris whiteheadi
  Macroglossus minimus
  Megaerops wetmorei
  Nyctimene rabori
  Otopteropus cartilagonodus
  Ptenochirus jagori
  Ptenochirus minor
  Pteropus dasymallus
  Pteropus hypomelanus
  Pteropus leucopterus
  Pteropus pumilus
  Pteropus speciosus
  Pteropus sp. A
  Pteropus vampyrus
  Rousettus amplexicaudatus
Emballonuridae (Sheath-tailed Bats)
  Emballonura alecto
  Saccolaimus saccolaimus
  Taphozous melanopogon
Megadermatidae (False Vampire and Ghost Bats)
  Megaderma spasma
Rhinolophidae (Horsehoe and Roundleaf Bats)
  Coelops hirsutus
  Hipposideros ater
  Hipposideros bicolor
  Hipposideros cervinus
  Hipposideros coronatus
  Hipposideros diadema
  Hipposideros lekaguli
  Hipposideros obscurus
  Hipposideros pygmaeus
  Rhinolophus acuminatus
  Rhinolophus anderseni
  Rhinolophus arcuatus
  Rhinolophus borneensis
  Rhinolophus creaghi
  Rhinolophus inops
  Rhinolophus macrotis
  Rhinolophus philippinensis
  Rhinolophus rufus
  Rhinolophus subrufus
  Rhinolophus virgo
Vespertilionidae (Vesper and Evening Bats)
  Glischropus tylopus
  Harpiocephalus harpia
  Kerivoula hardwickii
  Kerivoula pellucida
  Kerivoula whiteheadi
  Miniopterus australis
  Miniopterus schreibersi
  Miniopterus tristis
  Murina cyclotis
  Murina turbinaris
  Myotis ater
  Myotis horsfieldii
  Myotis macrotarsus
  Myotis muricola
  Myotis rufopictus
  Philetor brachypterus
  Phoniscus jagorii
  Pipistrellus javanicus
  Pipistrellus petersi
  Pipistrellus stenopterus
  Pipistrellus tenuis
  Scotophilus kuhlii
  Tylonycteris pachypus
  Tylonycteris robustula
Molossidae (Free-tailed Bats)
  Chaerophon plicata
  Cheiromeles parvidens
  Cheiromeles torquatus
  Mops sarasinorum
 Otomops sp.

PRIMATES
Loridae (Lorises and Coucangs)
  Nycticebus coucang
Tarsiidae (Tarsiers)
  Tarsius syrichta
Cercopithecidae (Monkies)
  Macaca fascicularis

PHOLIDOTA
Manidae (Pangolins)
  Manis javanica (Manis culionensis)

RODENTIA
Sciuridae (Squirrels)
  Exilisciurus concinnus
  Hylopetes nigripes
  Petinomys crinitus
  Sundasciurus hoogstraali
  Sundasciurus juvencus
  Sundasciurus moellendorffi
  Sundasciurus philippinensis
  Sundasciurus rabori
  Sundasciurus steeri
Muridae (Mice and Rats)
  Abditomys latidens
  Anonymomys mindorensis
  Apomys abrae
  Apomys datae
  Apomys gracilirostris
  Apomys hylocetes
  Apomys insignis
  Apomys littoralis
  Apomys microdon
  Apomys musculus
  Apomys sacobianus
  Apomys sp. A
  Apomys sp. B
  Apomys sp. C
  Apomys sp. D
  Apomys sp. E
  Archboldomys luzonensis
  Archboldomys sp. A  (Archboldomys musseri)
  Batomys dentatus
  Batomys granti
  Batomys salomonseni
  Batomys sp. A  (Batomys russatus)
  Bullimus bagobus
  Bullimus luzonicus
  Bullimus sp. A (Bullimus gamay)
  Carpomys melanurus
  Carpomys phaeurus
  Celaenomys silaceus
  Chiropodomys calamianensis
  Chrotomys gonzalesi
  Chrotomys mindorensis
  Chrotomys whiteheadi
  Chrotomys sibuyanensis
  Crateromys australis
  Crateromys heaneyi
  Crateromys paulus
  Crateromys schadenbergi
  Crunomys fallax
  Crunomys melanius
  Crunomys sp. A  (Crunomys suncoides)
  Haeromys sp. A (Haeromys pusillus)
  Limnomys sibuanus
  Limnomys sp. A (Limnomys bryophilus)
  Maxomys panglima
  Mus musculus
  Palawanomys furvus
  Phloeomys cumingi
  Phloeomys pallidus
  Rattus argentiventer
  Rattus everetti
  Rattus exulans
  Rattus mindorensis
  Rattus nitidus
  Rattus norvegicus
  Rattus tanezumi
  Rattus tawitawiensis
  Rattus tiomanicus
  Rattus sp. A
  Rhynchomys isarogensis
  Rhynchomys soricoides
  Sundamys muelleri
  Tarsomys apoensis
  Tarsomys echinatus
  Tarsomys sp. A
  Tarsomys sp. B (Limnomys bryophilus)
  Tryphomys adustus
Hystricidae (Porcupines)
  Hystrix pumila

CARNIVORA
Felidae (Cats)
  Prionailurus bengalensis
Mustelidae (Weasels, Otters and Badgers)
  Amblonyx cinereus
  Mydaus marchei
Herpestidae (Mongooses)
  Herpestes brachyurus
Viverridae (Civets)
  Arctictis binturong
  Paradoxurus hermaphroditus
  Viverra tangalunga

ARTIODACTYLA
Suidae (Pigs)
  Sus barbatus
  Sus cebifrons
  Sus philippensis
Tragulidae (Mouse-deer)
  Tragulus napu
Cervidae (Deer)
  Axis calamianensis
  Cervus alfredi
  Cervus mariannus
Bovidae (Cattle)
 Bubalus mindorensis

CETACEA
Balaenopteridae (Rorquals)
  Balaenoptera acutorostrata
  Balaenoptera edeni
  Megaptera novaeangliae
Delphinidae (Ocean Dolphins)
  Feresa attenuata
  Globicephala macrorhynchus
  Grampus griseus
  Lagenodelphis hosei
  Orcinus orca
  Peponocephala electra
  Pseudorca crassidens
  Stenella attenuata   
  Stenella coeruleoalba  
  Stenella longirostris
  Steno bredanensis
  Tursiops truncatus
Kogiidae (Dwarf and Pygmy Sperm Whales)
  Kogia breviceps
  Kogia simus
Physeteridae (Sperm Whales)
   Physeter catodon
Ziphiidae (Beaked Whales)
  Mesoplodon densirostris
  Ziphius cavirostris
Phocoenidae (Porposes)
  Neophocaena phocaenoides

SIRENIA
Dugongidae (Dugongs and Sea Cows)
  Dugong dugon