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Publications
2004 • 2003 • 2002 • 2001 • 2000 • 1999 • 1998 •
prior to 1998
Electronic Publications
All
Active Grants and Awards
2004 • 2003 • 2002 • 2001 • 2000 • 1999 • 1998 • 1997 • prior to 1997
Published Abstracts and Scientific Contributions
2004 • 2003 • 2002 • 2001 • 2000 • 1999 • 1998 • 1997 • prior to 1997
Acknowledgement
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Publications
2004
Bates, J.M., J. Haffer, and E. Grismer. 2004. Avian Mitochondrial DNA sequence divergence across as headwater stream of the Rio Tapajos, a major Amazonian river. Journal of Ornithology 145:199-205.
Bates, J.M., R.C.K. Bowie, D.E. Willard, G. Voelker, and C Kahindo. in press. A need for continued collecting of avian voucher specimens in Africa, or: Why blood is not enough. The Ostrich.
Blanco, O., A.M. Crespo, P.K. Divakar, T.L. Esslinger, D.L. Hawksworth and H.T. Lumbsch. 2004. Melanelixia and Melanohalea, two new genera segregated from Melanelia (Parmeliaceae) based on molecular and morphological evidence. Mycological Research 108:873-884.
Blanco, O., A.M. Crespo, J.A. Elix, D.L. Hawksworth and H.T. Lumbsch 2004. A new classification of parmelioid lichens containing Xanthoparmelia-type lichenan (Ascomycota: Lecanorales) based on morphological and molecular evidence. Taxon 53: 959-975.
Blanco, O., A.M. Crespo, P.K. Divakar, J.A. Elix, and H.T. Lumbsch. in press. Molecular phylogeny of parmotremoid lichens (Ascomycotina, Parmeliaceae). Mycologia.
Bowie, R.C.K., J. Fjeldså, S.J. Hackett, and T.M. Crowe. 2004. Systematics and biogeography of the Double-collared Sunbirds of the Eastern Arc Mountains, Tanzania. Auk 121:660-681.
Bowie, R.C.K., J. Fjeldså, S.J. Hackett, and T.M. Crowe. 2004. Molecular evolution in space and through time: mtDNA phylogeography of the Olive Sunbird (Nectarinia olivacea/obscura) throughout continental Africa. Molecular Phylogenetics and Evolution 33:56-76.
Emshwiller, E. in press. Evolution and conservation of clonally-propagated crops: insights from AFLP data and folk taxonomy of the Andean tuber “oca,” Oxalis tuberosa. In: T. Motley, N. Zerega, and H. Cross (eds.), Darwin’s Harvest: New Approaches to the Origins, Evolution, and Conservation of Crops, Colombia University Press.
Feldheim, K.A., S.H. Gruber, and M.V. Ashley. 2004. Reconstruction of parental microsatellite genotypes reveals female polyandry and philopatry in the lemon shark, Negaprion brevirostris. Evolution 58:2332-2342
Grube, M., E. Baloch, and H.T. Lumbsch. 2004. The phylogeny of Porinaceae (Ostropomyetidae) suggests neotenic origin of perithecia in Lecanoromycetes. Mycological Research 108:1111-1118.
Huhndorf, S.M., A.N. Miller, and F.A. Fernández. 2004. Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined. Mycologia 96:368-387.
Huhndorf, S.M., A.N. Miller, and F.A. Fernández. 2004. Molecular systematics of the Coronophorales and new species of Bertia, Lasiobertia and Nitschkia. Mycological Research 108:1384-1398.
Huhndorf, S.M., Å. Nyberg, M. Wedin, N. Lundqvist, and A.N. Miller. 2004. A reassessment of Schizothecium (Sordariales, Ascomycota) based on 28S large subunit nrDNA. Inoculum 55: 18. (Abst)
Ickert-Bond, S.M., K.B. Pigg and J. Wen. Comparative infructescence morphology and anatomy in Liquidambar L. (Altingiaceae) and its taxonomic and phylogenetic significance submitted to American Journal of Botany.
Ickert-Bond, S.M. and M.F. Wojciechowski. 2004. Phylogenetic relationships in Ephedra (Gnetales): Evidence from nuclear and chloroplast DNA sequence data. Systematic Botany 29:834-849.
Kalyabina-Hauf, S., N.B. Ananjeva, U. Joger, P. Lenk, R.W. Murphy, B.L. Stuart, N.L. Orlov, C. T. Ho, and M. Wink. 2004. Molecular phylogeny of the genus Acanthosaura (Agamidae). Current Herpetology 23:7-16.
Kearney, M. and B.L. Stuart. 2004. Repeated evolution of limblessness and digging heads in worm lizards revealed by DNA from old bones. Proceedings of the Royal Society of London B 271:1677-1683.
Klein, N.K., K.J. Burns, S.J. Hackett, and C.S. Griffiths. 2004. Molecular phylogenetic relationships among the wood warblers (Parulidae) and historical biogeography in the Caribbean basin. Journal of Caribbean Ornithology 17:3-17.
Kusumo, H.T., C.A. Pfister, and J.T. Wootton. 2004. Dominant (AFLP) and codominant (microsatellite) markers for the kelp Postelsia palmaeformis (Laminariales). Molecular Ecology Notes 4:372-375.
Kusumo, H.T., C.A. Pfister, and J.T. Wootton. Small-scale genetic structure in the sea palm Postelsia palmaeformis. submitted to Marine Biology.
Lee, C. and J. Wen. 2004. Phylogeny of Panax using chloroplast trnC – trnD intergenic region and the utility of trnC – trnD in interspecific studies of plants. Molecular Phylogenetics and Evolution. 31:894-903.
Lowry, P.P. II, G.M. Plunkett and J. Wen. 2004. Generic relationships in Araliaceae: looking into the crystal ball. South African Journal of Botany 70:382-392.
Lücking, R., B.L. Stuart, and H.T. Lumbsch. 2004. Phylogenetic relationships of Gomphillaceae (Ascomycota): evidence from a combined Bayesian analysis of nuclear and mitochondrial sequences. Mycologia 96:283-294.
Lumbsch, H.T., A. Mangold, R. Lücking, M.A. Garcia, M.P. and Martin. 2004. Phylogenetic position of the genera Nadvornikia and Pyrgillus (Ascomycota) based on molecular data. Symb. Bot. Upsal. 34:9-17.
Lumbsch, H.T., I. Schmitt, Z. Palice, E. Wiklund, S. Ekman, and M. Wedin. 2004. Supraordinal phylogenetic relationships of lichen-forming discomycetes (Lecanoromycetes) based on a combined Bayesian analysis of nuclear and mitochondrial sequences. Molecular Phylogenetics and Evolution 31:822-832.
Lumbsch, H.T., F. Fernandez, S. Huhndorf, R. Lindemuth, A. Mangold, A. Miller and I. Schmitt. in press. Performance of four ribosomal DNA regions to infer higher-level phylogenetic relationships of inoperculate euascomycetes (Leotiomyceta). Molecular Phylogenetics and Evolution.
Lutzoni, F., F. Kauff, C.J. Cox, D. McLaughlin, G. Celio, B. Dentinger, M. Padamsee, D. Hibbett, T.Y. James, E. Baloch, M. Grube, V. Reeb, V. Hofstetter, C. Schoch, A. E. Arnold, J. Miadlikowska, J. Spatafora, D. Johnson, S. Hambleton, M. Crockett, R. Shoemaker, G-H. Sung, R. Lücking, H.T. Lumbsch, K. O’Donnell, M. Binder, P. Diederich, D. Ertz, C. Gueidan, B. Hall, K. Hansen, R.C. Harris, K. Hosaka, Y-W. Lim, Y. Liu, B. Matheny, H. Nishida, D. Pfister, J. Rogers, A. Rossman, I. Schmitt, H. Sipman, J. Stone, J. Sugiyama, R. Yahr, and R. Vilgalys. 2004. Where are we in assembling the fungal tree of life, classifying the fungi, and understanding the evolution of their subcellular traits? American Journal of Botany 91:1446-1480.
Miller, A.N., and S.M. Huhndorf. 2004. Using phylogenetic species recognition to delimit species boundaries within Lasiosphaeria. Mycologia 96:1106-1127.
Miller, A.N., and S.M. Huhndorf. 2004. A natural classification of Lasiosphaeria based on nuclear LSU rDNA sequences. Mycological Research 108:26-34.
Miller, A.N., J. Fournier, S.M. Huhndorf, and A. Adie. 2004. Problems and perils of gene sequencing for estimating the phylogenetic relationships of three species of Lasiosphaeria. Inoculum 55:27 (Abst).
Mitchell, A. and J. Wen. 2004. Phylogenetic utility and evidence for multiple copies of granule-bound starch synthase I (GBSSI) in the Araliaceae. Taxon 53:29-41.
Mitchell, A. and J. Wen. in press. Phylogeny and biogeography of Brassaiopsis (Araliaceae), a widespread and morphologically diverse genus in Asia. Systematic Botany.
Nie, Z.-L., J. Wen, H. Sun, and B. Bartholomew. in press. Monophyly of Kelloggia Torrey ex Benth. (Rubiaceae) and evolution of its intercontinental disjunction between western North America and eastern Asia. American Journal of Botany.
Ott, S., M. Brinkmann, N. Wirtz, and H.T. Lumbsch. 2004. Mitochondrial and nuclear ribosomal DNA data do not support the separation of the Antarctic lichens Umbilicaria kappenii and Umbilicaria antarctica as distinct species. Lichenologist 36:227-234.
Palice, Z., I. Schmitt, and H.T. Lumbsch. in press. Sequence data support that Omphalina foliacea is a lichen-forming basidiomycete. Mycological Research.
Pandey, A. K., J. Wen, and M.K. Pathakin. in press. Evolution of Araliaceae in India inferred from sequences of internal transcribed spacer (ITS) regions of nuclear ribosomal DNA. Rheedea.
Parham, J. F., B. L. Stuart, R. Bour, and U. Fritz. in press. The evolutionary distinctiveness of the extinct Yunnan box turtle (Cuora yunnanensis) revealed by DNA from an old museum specimen. Biology Letters.
Pigg, K. B., S. M. Ickert-Bond, and J. Wen. 2004. Anatomically preserved Liquidambar (Altingiaceae) from the Middle Miocene of Yakima Canyon, Washington State, USA, and its biogeographic implications. American Journal of Botany 91:499-509.
Plunkett, G.M., J. Wen, and P.P. Lowry II. 2004. Infrafamilial relationships in Araliaceae: insights from nuclear (ITS) and plastid (trnL-trnF) sequence data. Plant Systematics and Evolution 245:1-39.
Ree, R. H. Phylogeny and the evolution of floral diversity in Pedicularis (Orobanchaceae). submitted to International Journal of Plant Sciences.
Roberts, T.E. Mitochondrial DNA reveals multiple levels of allopatric divergence in the endemic Philippine fruit bat Haplonycteris fischeri. submitted to Biological Journal of the Linnean Society.
Schmitt, I. and H.T. Lumbsch. 2004. Molecular phylogeny of the Pertusariaceae supports secondary chemistry as an important systematic character set in lichen- forming ascomycetes. Molecular Phylogenetics and Evolution 33:43-55.
Schmitt, I., G. Mueller and H.T. Lumbsch. in press: Ascoma morphology is homoplaseous and phylogenetically misleading in some pyrenocarpous lichens. Mycologia.
Solari, S., R.A. Van Den Bussche, S.R. Hoofer, and B.D. Patterson. 2004. Geographic distribution, ecology, and phylogenetic affinities of Thyroptera lavali Pine 1993. Acta Chiropterologica 6:293-302.
Stuart, B.L. and J.F. Parham. 2004. Molecular phylogeny of the critically endangered Indochinese box turtle (Cuora galbinifrons). Molecular Phylogenetics and Evolution 31:164-177.
Wedin, M., E. Wiklund, A. Crewe, A. Nyberg, H. Döring, S. Ekman, I. Schmitt and H.T. Lumbsch. in press. Phylogenetic relationships of the Lecanoromycetes (Acomycota) as revealed by analyses of mtSSU and nLSU rDNA sequence data. Mycological Research.
Wen, J. in press. Systematics and biogeography of Aralia L. sect. Dimorphanthus (Miq.) Miq. (Araliaceae). Cathaya.
Wen, J., P.P. Lowry II., and J. C. Zech. 2004. Osmorhiza bipatriata (Apiaceae) in Texas: taxonomic status and conservation considerations. SIDA 21:501-506.
Xiang, Q.-Y., W.-H. Zhang, R.E. Ricklefs, H. Qian, Z.-D. Chen, J. Wen, and J.H. Li. 2004. Regional differences in rates of plant speciation and molecular evolution: a comparison between eastern Asia and eastern North America. Evolution 58:2175- 2184.
Yi, T.-S., P.P. Lowry II., G.M. Plunkett, and J. Wen. 2004. Chromosomal evolution in Araliaceae and close relatives. Taxon 53: 987-1005.
Yi, T., A.J. Miller and J. Wen. 2004. Phylogenetic and biogeographic diversification of Rhus (Anacardiaceae) in the Northern Hemisphere. Molecular Phylogenetics and Evolution 33:861-879.
Zhou, S.-L. and J. Wen. in press. Loss of genetic diversity of domesticated Panax notoginseng (Araliaceae) as evidenced by ITS sequence and AFLP: a comparative study with P. stipuleanatus. Journal of Integrative Plant Biology.
Zhou, S.-L., T. Funamoto and J. Wen. 2004. Species relationships in Abelia sect. Abelia (Caprifoliaceae) in East Asia and verification of A. serrata in China: Evidence from AFLP analysis. Acta Botanica Yunnanica 26:405-412.
Zhou, Shi-Liang, J. Wen and De-Y. Hong. 2004. Allozyme diversity in Eleutherococcus senticosus a.d E. brachypus (Araliaceae) from China and its implications for conservation. Sida 21: 993-1007.
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